PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_20997_iso_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family TALE
Protein Properties Length: 431aa    MW: 48640.7 Da    PI: 6.326
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_20997_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox30.27.8e-103583951954
                                           HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                              Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                                           Fe   ++yp+ +e+  LA+++gLt++qV++WF N R +
  cra_locus_20997_iso_1_len_1526_ver_3 358 FEHflHPYPNDSEKLMLASQTGLTKNQVSNWFINARVR 395
                                           554459******************************88 PP

2BELL97.21.4e-31221291272
                                  BELL   2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                                           ++el  k  kL+ lleeV++rY+qy++ ++ ++ssFe +aglg+ k+Yt+lAl+a+SrhF +Lkdai +qi
  cra_locus_20997_iso_1_len_1526_ver_3 221 KHELWTKLLKLIALLEEVERRYEQYYNHMEELVSSFELIAGLGTGKSYTALALQAMSRHFCNLKDAILSQI 291
                                           689999***************************************************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.3E-22154289IPR006563POX domain
PfamPF075267.6E-32164287IPR006563POX domain
PROSITE profilePS5007112.017336399IPR001356Homeobox domain
CDDcd000862.70E-11339400No hitNo description
SMARTSM003891.1E-9339403IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.8E-27344405IPR009057Homeodomain-like
SuperFamilySSF466899.84E-18345406IPR009057Homeodomain-like
PfamPF059204.8E-17356395IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MVSEDSPANP NSSILHQFNI SNTINANENQ YGQHFDAYAT DINGHCGYHS LGSMPGLQSL  60
HAPQMTDESD LGHRHLMDLL GTSNEGNYQT QRLSLTLVPP PVQERQRSLN QNLINPAGYM  120
ISGENARDHQ CMNSNYSFGG SSSPTRSSST SYGTEFLAVT IGNLKPAQTL LDEMVKISSK  180
TIDLSNEKYV RKLSRNSKRG SLKLRSELTL EFPNDDVCSD KHELWTKLLK LIALLEEVER  240
RYEQYYNHME ELVSSFELIA GLGTGKSYTA LALQAMSRHF CNLKDAILSQ IVGLKQKMSP  300
DMPKISAGIS QLSLFDREMR QNRMSLQQLG LIQSSRQAWR PIRGLPETSV AILRSWLFEH  360
FLHPYPNDSE KLMLASQTGL TKNQVSNWFI NARVRLWKPM IEEMYKEEFA DSSLESNPSF  420
TQEGFADSAE D
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A2e-16345403563Homeobox protein Meis2
3k2a_B2e-16345403563Homeobox protein Meis2
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011083617.11e-175PREDICTED: BEL1-like homeodomain protein 11
SwissprotQ1PFD12e-92BLH11_ARATH; BEL1-like homeodomain protein 11
TrEMBLA0A068UG590.0A0A068UG59_COFCA; Uncharacterized protein
STRINGVIT_18s0001g13130.t011e-171(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA86022228